Transcript: PPFIA2-AS1:19

Basic information

LNCipedia transcript ID: PPFIA2-AS1:19 
HGNC Gene Symbol: PPFIA2-AS1    
HGNC Full Gene Name: PPFIA2 antisense RNA 1
Ensembl Gene ID: ENSG00000257467
Ensembl Transcript ID: ENST00000550999
Location (hg38): chr12:81279201-81298283
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 752 bp
Exons: 5
Sources: Biogazelle lncRNA chip; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000550999; ENST00000550999.1; RP11-121G22.3-007; OTTHUMT00000408175.1; NONHSAT029699; ENST00000550999.5
Alternative gene names: ENSG00000257467; RP11-121G22.3; ENSG00000257467.1; OTTHUMG00000170246.1; ENSG00000257467.5; PPFIA2-AS1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -36.5945 non-coding 
CPAT coding probability 8.64% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
PPFIA2-AS1:19 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-ACSS3-1:7
3.1 lnc-ACSS3-1:7
4.0 lnc-ACSS3-1:7
4.1 lnc-ACSS3-1:7
5.0 lnc-ACSS3-1:7
5.1 PPFIA2-AS1:10
5.2 PPFIA2-AS1:19