Transcript: PPP1R26-AS1:8

Basic information

LNCipedia transcript ID: PPP1R26-AS1:8 
LNCipedia gene ID: PPP1R26-AS1
Location (hg38): chr9:135462719-135472249
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 2927 bp
Exons: 3
Sources: NONCODE v4; Refseq - Dec 2014
Alternative transcript names: NONHSAT135443; NR_038969
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 2.6676 non-coding 
CPAT coding probability 2.88% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
PPP1R26-AS1:8 no no no no

Available literature

  1. Xu (2017), Oncogenic long noncoding RNA landscape in breast cancer., Mol. Cancer


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-C9orf116-2:8
4.0 PPP1R26-AS1:8
4.1 PPP1R26-AS1:8
5.0 PPP1R26-AS1:8
5.1 PPP1R26-AS1:8
5.2 PPP1R26-AS1:8