Transcript: PRKCA-AS1:1

Basic information

LNCipedia transcript ID: PRKCA-AS1:1 
HGNC Gene Symbol: PRKCA-AS1    
HGNC Full Gene Name: PRKCA antisense RNA 1
Ensembl Gene ID: ENSG00000264630
Ensembl Transcript ID: ENST00000584715
Location (hg38): chr17:66398069-66416854
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 2113 bp
Exons: 3
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000584715.1; RP11-4F22.2-001; OTTHUMT00000446979.1; NONHSAT055389; ENST00000584715.5
Alternative gene names: ENSG00000264630.1; RP11-4F22.2; OTTHUMG00000179537.1; ENSG00000264630.5; PRKCA-AS1;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -22.3591 non-coding 
CPAT coding probability 10.30% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
PRKCA-AS1:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-APOH-1:1
4.0 PRKCA-AS1:1
4.1 PRKCA-AS1:1
5.0 PRKCA-AS1:1
5.1 PRKCA-AS1:1
5.2 PRKCA-AS1:1