Transcript: PRKCA-AS1:2

Basic information

LNCipedia transcript ID: PRKCA-AS1:2 
LNCipedia gene ID: PRKCA-AS1
RefSeq ID: NR_110822
Location (hg38): chr17:66398069-66416854
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 1356 bp
Exons: 4
Sources: Refseq - Dec 2014; Refseq - NCBI Annotation Release 106
Alternative transcript names: NR_110822; NR_110822.1
Alternative gene names: ; PRKCA-AS1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -125.4984 non-coding 
CPAT coding probability 1.37% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
PRKCA-AS1:2 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-APOH-1:4
4.0 PRKCA-AS1:2
4.1 PRKCA-AS1:2
5.0 PRKCA-AS1:2
5.1 PRKCA-AS1:2
5.2 PRKCA-AS1:2