Transcript: PRKCZ-AS1:6

Basic information

LNCipedia transcript ID: PRKCZ-AS1:6 
LNCipedia gene ID: PRKCZ-AS1
Location (hg38): chr1:2181794-2184053
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 2260 bp
Exons: 1
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014
Alternative transcript names: ENST00000536678.1; RP11-181G12.2-201; NONHSAT000394
Alternative gene names: ENSG00000182873.4; RP11-181G12.2; OTTHUMG00000001239.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -3.1002 non-coding 
CPAT coding probability 97.66% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
PRKCZ-AS1:6 yes no no no

Available literature

  1. Chen (2016), Detection and Analysis of Wnt Pathway Related lncRNAs Expression Profile in Lung Adenocarcinoma., Pathol. Oncol. Res.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-C1orf86-1:2
4.0 lnc-C1orf86-1:2
4.1 lnc-C1orf86-1:2
5.0 lnc-C1orf86-1:2
5.1 PRKCZ-AS1:3
5.2 PRKCZ-AS1:6