Transcript: PRKCZ-AS1:7

Basic information

LNCipedia transcript ID: PRKCZ-AS1:7 
HGNC Gene Symbol: PRKCZ-AS1    
HGNC Full Gene Name: PRKCZ antisense RNA 1
Ensembl Gene ID: ENSG00000182873
Ensembl Transcript ID: ENST00000333854
Location (hg38): chr1:2181794-2183875
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 1253 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000333854.2; RP11-181G12.2-001; OTTHUMT00000003654.1; NONHSAT000393
Alternative gene names: ENSG00000182873.4; RP11-181G12.2; OTTHUMG00000001239.2; ENSG00000182873.5; PRKCZ-AS1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -3.1002 non-coding 
CPAT coding probability 97.78% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
PRKCZ-AS1:7 yes no no no

Available literature

  1. Chen (2016), Detection and Analysis of Wnt Pathway Related lncRNAs Expression Profile in Lung Adenocarcinoma., Pathol. Oncol. Res.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-C1orf86-1:3
4.0 lnc-C1orf86-1:3
4.1 lnc-C1orf86-1:3
5.0 lnc-C1orf86-1:3
5.1 PRKCZ-AS1:4
5.2 PRKCZ-AS1:7