Transcript: PRKG1-AS1:13

Basic information

LNCipedia transcript ID: PRKG1-AS1:13 
LNCipedia gene ID: PRKG1-AS1
Location (hg38): chr10:52230080-52314123
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 2362 bp
Exons: 7
Sources: FANTOM CAT (stringent)
Alternative transcript names: ENSG00000236671.3|MICT00000042099.1
Alternative gene names: RP11-573I11.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score 6.7263 non-coding 
CPAT coding probability 14.01% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
PRKG1-AS1:13 yes no no no

Available literature

  1. Zhang (2016), Long noncoding RNA expression profile in fibroblast-like synoviocytes from patients with rheumatoid arthritis., Arthritis Res. Ther.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 PRKG1-AS1:13
5.0 PRKG1-AS1:13
5.1 PRKG1-AS1:13
5.2 PRKG1-AS1:13