Transcript: PRKG1-AS1:2

Basic information

LNCipedia transcript ID: PRKG1-AS1:2 
LNCipedia gene ID: PRKG1-AS1
Location (hg38): chr10:52227038-52425337
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 217 bp
Exons: 3
Sources: Nielsen et al.,2014
Alternative transcript names: l_313_chr10:53986797-54185097_lymphNode
Alternative gene names: ; RP11-573I11.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -262.8785 non-coding 
CPAT coding probability 0.50% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
PRKG1-AS1:2 no no no no

Available literature

  1. Zhang (2016), Long noncoding RNA expression profile in fibroblast-like synoviocytes from patients with rheumatoid arthritis., Arthritis Res. Ther.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-MBL2-5:5
4.0 PRKG1-AS1:2
4.1 PRKG1-AS1:2
5.0 PRKG1-AS1:2
5.1 PRKG1-AS1:2
5.2 PRKG1-AS1:2