Transcript: PRKG1-AS1:3

Basic information

LNCipedia transcript ID: PRKG1-AS1:3 
HGNC Gene Symbol: PRKG1-AS1    
HGNC Full Gene Name: PRKG1 antisense RNA 1
Ensembl Gene ID: ENSG00000236671
Ensembl Transcript ID: ENST00000420193
Location (hg38): chr10:52300803-52314128
Strand: -
Class: bidirectional
Sequence Ontology term:
Transcript size: 971 bp
Exons: 6
Sources: Biogazelle lncRNA chip; Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000420193; TCONS_00017980; ENST00000420193.1; RP11-573I11.2-003; OTTHUMT00000048110.1; NONHSAT139977
Alternative gene names: ENSG00000236671; XLOC_008822; linc-CSTF2T-1; RP11-573I11.2; ENSG00000236671.1; OTTHUMG00000018251.1; ENSG00000236671.3; PRKG1-AS1; ENSG00000236671.7;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -99.0483 non-coding 
CPAT coding probability 22.38% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
PRKG1-AS1:3 no no no no

Available literature

  1. Zhang (2016), Long noncoding RNA expression profile in fibroblast-like synoviocytes from patients with rheumatoid arthritis., Arthritis Res. Ther.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-MBL2-4:1
3.1 lnc-MBL2-5:1
4.0 PRKG1-AS1:3
4.1 PRKG1-AS1:3
5.0 PRKG1-AS1:3
5.1 PRKG1-AS1:3
5.2 PRKG1-AS1:3