Transcript: PRKG1-AS1:4

Basic information

LNCipedia transcript ID: PRKG1-AS1:4 
LNCipedia gene ID: PRKG1-AS1
RefSeq ID: NR_038277
Location (hg38): chr10:52296848-52314128
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 2253 bp
Exons: 6
Sources: Refseq - Dec 2014; Refseq - NCBI Annotation Release 106
Alternative transcript names: NR_038277; NR_038277.1
Alternative gene names: ; RP11-573I11.2; PRKG1-AS1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -25.1662 non-coding 
CPAT coding probability 10.27% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
PRKG1-AS1:4 yes no no no

Available literature

  1. Zhang (2016), Long noncoding RNA expression profile in fibroblast-like synoviocytes from patients with rheumatoid arthritis., Arthritis Res. Ther.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-MBL2-5:6
4.0 PRKG1-AS1:4
4.1 PRKG1-AS1:4
5.0 PRKG1-AS1:4
5.1 PRKG1-AS1:4
5.2 PRKG1-AS1:4