Transcript: PRKG1-AS1:5

Basic information

LNCipedia transcript ID: PRKG1-AS1:5 
LNCipedia gene ID: PRKG1-AS1
Location (hg38): chr10:52230397-52314110
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 2432 bp
Exons: 9
Sources: NONCODE v4
Alternative transcript names: NONHSAT013418
Alternative gene names: ; RP11-573I11.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 6.7263 non-coding 
CPAT coding probability 10.18% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
PRKG1-AS1:5 yes no no no

Available literature

  1. Zhang (2016), Long noncoding RNA expression profile in fibroblast-like synoviocytes from patients with rheumatoid arthritis., Arthritis Res. Ther.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-MBL2-5:7
4.0 PRKG1-AS1:5
4.1 PRKG1-AS1:5
5.0 PRKG1-AS1:5
5.1 PRKG1-AS1:5
5.2 PRKG1-AS1:5