Transcript: PRKG1-AS1:8

Basic information

LNCipedia transcript ID: PRKG1-AS1:8 
LNCipedia gene ID: PRKG1-AS1
Location (hg38): chr10:52251965-52297915
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 1110 bp
Exons: 4
Sources: Biogazelle lncRNA chip; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4
Alternative transcript names: ENST00000426785; ENST00000426785.1; RP11-573I11.2-002; OTTHUMT00000048109.1; NONHSAT013420
Alternative gene names: ENSG00000236671; RP11-573I11.2; ENSG00000236671.1; OTTHUMG00000018251.1;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -121.8203 non-coding 
CPAT coding probability 1.68% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
PRKG1-AS1:8 yes no no no

Available literature

  1. Zhang (2016), Long noncoding RNA expression profile in fibroblast-like synoviocytes from patients with rheumatoid arthritis., Arthritis Res. Ther.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-MBL2-4:3
3.1 lnc-MBL2-5:3
4.0 PRKG1-AS1:8
4.1 PRKG1-AS1:8
5.0 PRKG1-AS1:8
5.1 PRKG1-AS1:8
5.2 PRKG1-AS1:8