Transcript: PRKG1-AS1:9

Basic information

LNCipedia transcript ID: PRKG1-AS1:9 
HGNC Gene Symbol: PRKG1-AS1    
HGNC Full Gene Name: PRKG1 antisense RNA 1
Ensembl Gene ID: ENSG00000236671
Ensembl Transcript ID: ENST00000426785
Location (hg38): chr10:52251965-52297915
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 1111 bp
Exons: 4
Sources: NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: NONHSAT013421; ENST00000426785.2
Alternative gene names: ENSG00000236671.3; PRKG1-AS1; ENSG00000236671.7; ; RP11-573I11.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -121.8203 non-coding 
CPAT coding probability 1.68% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
PRKG1-AS1:9 yes no no no

Available literature

  1. Zhang (2016), Long noncoding RNA expression profile in fibroblast-like synoviocytes from patients with rheumatoid arthritis., Arthritis Res. Ther.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-MBL2-5:9
4.0 PRKG1-AS1:9
4.1 PRKG1-AS1:9
5.0 PRKG1-AS1:9
5.1 PRKG1-AS1:9
5.2 PRKG1-AS1:9