Transcript: PRNT:6

Basic information

LNCipedia transcript ID: PRNT:6 
HGNC Gene Symbol: PRNT    
HGNC Full Gene Name: prion locus lncRNA, testis expressed
Ensembl Gene ID: ENSG00000180259
Ensembl Transcript ID: ENST00000423718
RefSeq ID: NR_024268
Location (hg38): chr20:4731282-4740668
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 2096 bp
Exons: 2
Sources: Refseq - Dec 2014; Ensembl release 92 - Apr 2018; Refseq - NCBI Annotation Release 106
Alternative transcript names: NR_024268; NR_024268.1; ENST00000423718.2
Alternative gene names: PRNT; ENSG00000180259.9


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -87.3437 non-coding 
CPAT coding probability 4.19% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
PRNT:6 no no no no

Available literature

  1. Harrison (2010), Genomic assessment of the evolution of the prion protein gene family in vertebrates., Genomics
  2. Makrinou (2002), Genomic characterization of the human prion protein (PrP) gene locus., Mamm. Genome


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-PRNT-2:2
4.0 lnc-PRNT-2:2
4.1 lnc-PRNT-2:2
5.0 lnc-PRNT-2:2
5.1 PRNT:3
5.2 PRNT:6