Transcript: PROX1-AS1:12

Basic information

LNCipedia transcript ID: PROX1-AS1:12 
HGNC Gene Symbol: PROX1-AS1    
HGNC Full Gene Name: PROX1 antisense RNA 1
Ensembl Gene ID: ENSG00000230461
Ensembl Transcript ID: ENST00000598091
Location (hg38): chr1:213966132-213987630
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 720 bp
Exons: 5
Sources: NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: NONHSAT009448; ENST00000598091.1
Alternative gene names: ENSG00000230461.4; PROX1-AS1; ENSG00000230461.8;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -79.9891 non-coding 
CPAT coding probability 38.09% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
PROX1-AS1:12 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-PTPN14-3:10
4.0 PROX1-AS1:12
4.1 PROX1-AS1:12
5.0 PROX1-AS1:12
5.1 PROX1-AS1:12
5.2 PROX1-AS1:12