Transcript: PROX1-AS1:35

Basic information

LNCipedia transcript ID: PROX1-AS1:35 
LNCipedia gene ID: PROX1-AS1
Location (hg38): chr1:213817751-213966265
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 5185 bp
Exons: 5
Sources: NONCODE v4; Ensembl release 75 - Feb 2014
Alternative transcript names: NONHSAT009428; ENST00000433082.2
Alternative gene names: ENSG00000230461.4; PROX1-AS1;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -33.5873 non-coding 
CPAT coding probability 10.20% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
PROX1-AS1:35 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-PTPN14-3:18
4.0 PROX1-AS1:35
4.1 PROX1-AS1:35
5.0 PROX1-AS1:35
5.1 PROX1-AS1:35
5.2 PROX1-AS1:35