Transcript: PROX1-AS1:38

Basic information

LNCipedia transcript ID: PROX1-AS1:38 
HGNC Gene Symbol: PROX1-AS1    
HGNC Full Gene Name: PROX1 antisense RNA 1
Ensembl Gene ID: ENSG00000230461
Ensembl Transcript ID: ENST00000413560
Location (hg38): chr1:213840728-213966258
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 496 bp
Exons: 4
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000413560; ENST00000413560.1; PROX1-AS1-002; OTTHUMT00000089729.1; NONHSAT009440; ENST00000413560.5
Alternative gene names: ENSG00000230461; RP11-478J18.1; ENSG00000230461.2; PROX1-AS1; OTTHUMG00000036947.2; ENSG00000230461.4; ENSG00000230461.8;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -79.9891 non-coding 
CPAT coding probability 1.41% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
PROX1-AS1:38 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-PTPN14-2:2
3.1 lnc-PTPN14-3:3
4.0 PROX1-AS1:38
4.1 PROX1-AS1:38
5.0 PROX1-AS1:38
5.1 PROX1-AS1:38
5.2 PROX1-AS1:38