Transcript: PROX1-AS1:49

Basic information

LNCipedia transcript ID: PROX1-AS1:49 
LNCipedia gene ID: PROX1-AS1
Location (hg38): chr1:213822357-213915962
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 311 bp
Exons: 4
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00002585; NONHSAT009434
Alternative gene names: XLOC_001199; linc-ANGEL2-2;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -183.5033 non-coding 
CPAT coding probability 1.42% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
PROX1-AS1:49 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-PTPN14-2:3
3.1 lnc-PTPN14-3:4
4.0 PROX1-AS1:49
4.1 PROX1-AS1:49
5.0 PROX1-AS1:49
5.1 PROX1-AS1:49
5.2 PROX1-AS1:49