Transcript: PROX1-AS1:60

Basic information

LNCipedia transcript ID: PROX1-AS1:60 
LNCipedia gene ID: PROX1-AS1
Location (hg38): chr1:213821846-213832646
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 713 bp
Exons: 2
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00002584; NONHSAT009431
Alternative gene names: XLOC_001199; linc-ANGEL2-2;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -103.3288 non-coding 
CPAT coding probability 12.67% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
PROX1-AS1:60 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-PTPN14-2:5
3.1 lnc-PTPN14-3:6
4.0 PROX1-AS1:60
4.1 PROX1-AS1:60
5.0 PROX1-AS1:60
5.1 PROX1-AS1:60
5.2 PROX1-AS1:60