Transcript: PRR29-AS1:4

Basic information

LNCipedia transcript ID: PRR29-AS1:4 
LNCipedia gene ID: PRR29-AS1
Location (hg38): chr17:63996148-63997944
Strand: -
Class: bidirectional
Sequence Ontology term:
Transcript size: 1296 bp
Exons: 2
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00025728; NONHSAT055255
Alternative gene names: XLOC_012549; linc-SCN4A;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -6.1926 non-coding 
CPAT coding probability 2.94% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
PRR29-AS1:4 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-ICAM2-1:2
3.1 lnc-ICAM2-1:3
4.0 PRR29-AS1:4
4.1 PRR29-AS1:4
5.0 PRR29-AS1:4
5.1 PRR29-AS1:4
5.2 PRR29-AS1:4