Transcript: PRR7-AS1:10

Basic information

LNCipedia transcript ID: PRR7-AS1:10 
LNCipedia gene ID: PRR7-AS1
Location (hg38): chr5:177448052-177452141
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 3872 bp
Exons: 2
Sources: Biogazelle lncRNA chip; Ensembl release 64 - Sep 2011; NONCODE v4
Alternative transcript names: ENST00000513271; NONHSAT105420
Alternative gene names: ENSG00000248342; AC145098.1;

RNA sequence:


Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -78.6823 non-coding 
CPAT coding probability 94.87% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
PRR7-AS1:10 no no no no

Available literature

  1. Strausberg (2002), Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences., Proc. Natl. Acad. Sci. U.S.A.

LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-DBN1-1:1
3.1 lnc-DBN1-1:1
4.0 lnc-DBN1-1:1
4.1 PRR7-AS1:10
5.0 PRR7-AS1:10
5.1 PRR7-AS1:10
5.2 PRR7-AS1:10