Transcript: PRR7-AS1:6

Basic information

LNCipedia transcript ID: PRR7-AS1:6 
HGNC Gene Symbol: PRR7-AS1    
HGNC Full Gene Name: PRR7 antisense RNA 1
Ensembl Gene ID: ENSG00000246334
Ensembl Transcript ID: ENST00000514846
Location (hg38): chr5:177442803-177444580
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 543 bp
Exons: 3
Sources: Biogazelle lncRNA chip; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000514846; ENST00000514846.1; RP11-1334A24.4-004; OTTHUMT00000373189.1; NONHSAT105417
Alternative gene names: ENSG00000246334; RP11-1334A24.4; ENSG00000246334.2; OTTHUMG00000163400.1; PRR7-AS1;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -77.3719 non-coding 
CPAT coding probability 4.81% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
PRR7-AS1:6 yes no no no

Available literature

  1. Strausberg (2002), Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences., Proc. Natl. Acad. Sci. U.S.A.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-DBN1-2:3
3.1 lnc-DBN1-2:3
4.0 PRR7-AS1:6
4.1 PRR7-AS1:6
5.0 PRR7-AS1:6
5.1 PRR7-AS1:6
5.2 PRR7-AS1:6