Transcript: PRRX2-AS1:2

Basic information

LNCipedia transcript ID: PRRX2-AS1:2 
HGNC Gene Symbol: PRRX2-AS1    
HGNC Full Gene Name: PRRX2 antisense RNA 1
Ensembl Gene ID: ENSG00000236024
Ensembl Transcript ID: ENST00000440413
Location (hg38): chr9:129712896-129718635
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 429 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000440413.1; RP11-483H20.6-001; OTTHUMT00000054597.1
Alternative gene names: ENSG00000236024.1; RP11-483H20.6; OTTHUMG00000020789.1; PRRX2-AS1;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -125.5953 non-coding 
CPAT coding probability 3.58% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
PRRX2-AS1:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-PTGES-1:1
4.0 PRRX2-AS1:2
4.1 PRRX2-AS1:2
5.0 PRRX2-AS1:2
5.1 PRRX2-AS1:2
5.2 PRRX2-AS1:2