Transcript: PSD2-AS1:15

Basic information

LNCipedia transcript ID: PSD2-AS1:15 
HGNC Gene Symbol: PSD2-AS1    
HGNC Full Gene Name: PSD2 antisense RNA 1
Ensembl Gene ID: ENSG00000249131
Ensembl Transcript ID: ENST00000515306
Location (hg38): chr5:139741349-139746223
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 412 bp
Exons: 3
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00009793; ENST00000515306; ENST00000515306.1; CTB-35F21.2-001; OTTHUMT00000372777.1
Alternative gene names: XLOC_005020; linc-TMEM173-2; ENSG00000249131; CTB-35F21.2; ENSG00000249131.1; OTTHUMG00000163335.1; PSD2-AS1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -147.8232 non-coding 
CPAT coding probability 1.87% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
PSD2-AS1:15 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-NRG2-3:1
3.1 lnc-NRG2-3:1
4.0 lnc-NRG2-3:1
4.1 lnc-NRG2-3:1
5.0 lnc-NRG2-3:1
5.1 PSD2-AS1:6
5.2 PSD2-AS1:15