Transcript: PSD2-AS1:19

Basic information

LNCipedia transcript ID: PSD2-AS1:19 
LNCipedia gene ID: PSD2-AS1
Location (hg38): chr5:139740977-139746215
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 769 bp
Exons: 3
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00010500; NONHSAT104125
Alternative gene names: XLOC_005020; linc-TMEM173-2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -147.8232 non-coding 
CPAT coding probability 1.83% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
PSD2-AS1:19 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-NRG2-3:2
3.1 lnc-NRG2-3:2
4.0 lnc-NRG2-3:2
4.1 lnc-NRG2-3:2
5.0 lnc-NRG2-3:2
5.1 PSD2-AS1:10
5.2 PSD2-AS1:19