Transcript: PSMG3-AS1:13

Basic information

LNCipedia transcript ID: PSMG3-AS1:13 
LNCipedia gene ID: PSMG3-AS1
Location (hg38): chr7:1570234-1575971
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 380 bp
Exons: 3
Sources: Biogazelle lncRNA chip; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; Ensembl release 75 - Feb 2014
Alternative transcript names: ENST00000524978; ENST00000524978.1; AC093734.11-007; OTTHUMT00000388798.1
Alternative gene names: ENSG00000230487; AC093734.11; ENSG00000230487.3; OTTHUMG00000151452.2; PSMG3-AS1; KIAA1908


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 1 non-coding 
PhyloCSF score -338.9435 non-coding 
CPAT coding probability 0.81% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
PSMG3-AS1:13 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-MAFK-1:6
3.1 lnc-MAFK-1:6
4.0 PSMG3-AS1:13
4.1 PSMG3-AS1:13
5.0 PSMG3-AS1:13
5.1 PSMG3-AS1:13
5.2 PSMG3-AS1:13