Transcript: PSMG3-AS1:5

Basic information

LNCipedia transcript ID: PSMG3-AS1:5 
HGNC Gene Symbol: PSMG3-AS1    
HGNC Full Gene Name: PSMG3 antisense RNA 1 (head to head)
Ensembl Gene ID: ENSG00000230487
Ensembl Transcript ID: ENST00000457484
Location (hg38): chr7:1570089-1589621
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 3839 bp
Exons: 6
Sources: Biogazelle lncRNA chip; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000457484; ENST00000457484.2; AC093734.11-003; OTTHUMT00000322711.2; ENST00000457484.6
Alternative gene names: ENSG00000230487; AC093734.11; ENSG00000230487.3; OTTHUMG00000151452.2; PSMG3-AS1; ENSG00000230487.7; KIAA1908


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 1 non-coding 
PhyloCSF score -0.5055 non-coding 
CPAT coding probability 31.60% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
PSMG3-AS1:5 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-MAFK-1:2
3.1 lnc-MAFK-1:2
4.0 PSMG3-AS1:5
4.1 PSMG3-AS1:5
5.0 PSMG3-AS1:5
5.1 PSMG3-AS1:5
5.2 PSMG3-AS1:5