Transcript: PTCHD1-AS:2

Basic information

LNCipedia transcript ID: PTCHD1-AS:2 
HGNC Gene Symbol: PTCHD1-AS    
HGNC Full Gene Name: PTCHD1 antisense RNA (head to head)
Ensembl Gene ID: ENSG00000233067
Ensembl Transcript ID: ENST00000455399
Location (hg38): chrX:22389315-23064119
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 718 bp
Exons: 4
Sources: Gencode v13; Ensembl release 68 - Jul 2012; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000455399.1; RP11-40F8.2-001; OTTHUMT00000056044.1
Alternative gene names: ENSG00000233067.1; RP11-40F8.2; OTTHUMG00000021249.1; ENSG00000233067.2; PTCHD1-AS; PTCHD1AS1; PTCHD1AS2; DDX53-AS1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -135.3076 non-coding 
CPAT coding probability 15.68% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
PTCHD1-AS:2 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-SMPX-2:1
4.0 PTCHD1-AS:2
4.1 PTCHD1-AS:2
5.0 PTCHD1-AS:2
5.1 PTCHD1-AS:2
5.2 PTCHD1-AS:2