Transcript: PTOV1-AS2:2

Basic information

LNCipedia transcript ID: PTOV1-AS2:2 
HGNC Gene Symbol: PTOV1-AS2    
HGNC Full Gene Name: PTOV1 antisense RNA 2
Ensembl Gene ID: ENSG00000269352
Ensembl Transcript ID: ENST00000593654
Location (hg38): chr19:49856970-49859289
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 596 bp
Exons: 5
Sources: NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: NONHSAT067266; ENST00000593654.1
Alternative gene names: ENSG00000269352.1; AC018766.5; PTOV1-AS2;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -12.447 non-coding 
CPAT coding probability 45.97% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
PTOV1-AS2:2 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-PNKP-6:2
4.0 PTOV1-AS2:2
4.1 PTOV1-AS2:2
5.0 PTOV1-AS2:2
5.1 PTOV1-AS2:2
5.2 PTOV1-AS2:2