Transcript: PTOV1-AS2:6

Basic information

LNCipedia transcript ID: PTOV1-AS2:6 
LNCipedia gene ID: PTOV1-AS2
Ensembl Gene ID: ENSG00000268047
Ensembl Transcript ID: ENST00000601211
Location (hg38): chr19:49852887-49854967
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 484 bp
Exons: 3
Sources: NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: NONHSAT067261; ENST00000601211.1
Alternative gene names: ENSG00000268047.1; AC018766.6; ; AC018766.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -88.1699 non-coding 
CPAT coding probability 0.39% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
PTOV1-AS2:6 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-PNKP-7:1
4.0 PTOV1-AS2:6
4.1 PTOV1-AS2:6
5.0 PTOV1-AS2:6
5.1 PTOV1-AS2:6
5.2 PTOV1-AS2:6