Transcript: PTPRD-AS1:1

Basic information

LNCipedia transcript ID: PTPRD-AS1:1 
LNCipedia gene ID: PTPRD-AS1
RefSeq ID: NR_121599
Location (hg38): chr9:8858018-8861727
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 1334 bp
Exons: 3
Sources: Refseq - Dec 2014; Refseq - NCBI Annotation Release 106
Alternative transcript names: NR_121599; NR_121599.1
Alternative gene names: ; PTPRD-AS1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -93.0888 non-coding 
CPAT coding probability 1.27% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
PTPRD-AS1:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-KDM4C-8:4
4.0 PTPRD-AS1:1
4.1 PTPRD-AS1:1
5.0 PTPRD-AS1:1
5.1 PTPRD-AS1:1
5.2 PTPRD-AS1:1