Transcript: PTPRD-AS1:2

Basic information

LNCipedia transcript ID: PTPRD-AS1:2 
LNCipedia gene ID: PTPRD-AS1
RefSeq ID: NR_121600
Location (hg38): chr9:8858018-8861727
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 1252 bp
Exons: 2
Sources: Refseq - Dec 2014; Refseq - NCBI Annotation Release 106
Alternative transcript names: NR_121600; NR_121600.1
Alternative gene names: ; PTPRD-AS1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -93.0888 non-coding 
CPAT coding probability 1.28% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
PTPRD-AS1:2 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-KDM4C-8:3
4.0 PTPRD-AS1:2
4.1 PTPRD-AS1:2
5.0 PTPRD-AS1:2
5.1 PTPRD-AS1:2
5.2 PTPRD-AS1:2