Transcript: PTPRD-AS1:6

Basic information

LNCipedia transcript ID: PTPRD-AS1:6 
LNCipedia gene ID: PTPRD-AS1
Location (hg38): chr9:8858131-8862255
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 1667 bp
Exons: 2
Sources: FANTOM CAT (stringent)
Alternative transcript names: ENSG00000225706.1|ENST00000447950.1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -93.0888 non-coding 
CPAT coding probability 0.71% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
PTPRD-AS1:6 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 PTPRD-AS1:6
5.0 PTPRD-AS1:6
5.1 PTPRD-AS1:6
5.2 PTPRD-AS1:6