Transcript: PTPRD-AS2:4

Basic information

LNCipedia transcript ID: PTPRD-AS2:4 
LNCipedia gene ID: PTPRD-AS2
RefSeq ID: NR_110696
Location (hg38): chr9:10613206-10620420
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 2834 bp
Exons: 3
Sources: Refseq - Dec 2014; Refseq - NCBI Annotation Release 106
Alternative transcript names: NR_110696; NR_110696.1
Alternative gene names: ; PTPRD-AS2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score 16.0546 non-coding 
CPAT coding probability 5.56% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
PTPRD-AS2:4 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-TYRP1-3:5
4.0 PTPRD-AS2:4
4.1 PTPRD-AS2:4
5.0 PTPRD-AS2:4
5.1 PTPRD-AS2:4
5.2 PTPRD-AS2:4