Transcript: PTPRG-AS1:17

Basic information

LNCipedia transcript ID: PTPRG-AS1:17 
LNCipedia gene ID: PTPRG-AS1
Location (hg38): chr3:62264042-62369342
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 514 bp
Exons: 5
Sources: FANTOM CAT (stringent)
Alternative transcript names: ENSG00000241472.2|ENST00000495542.1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -195.653 non-coding 
CPAT coding probability 0.40% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
PTPRG-AS1:17 no no no no

Available literature

  1. Iranpour (2016), Expression analysis of four long noncoding RNAs in breast cancer., Tumour Biol.
  2. Zhao (2014), Comprehensive characterization of cancer subtype associated long non-coding RNAs and their clinical implications., Sci Rep


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 PTPRG-AS1:17
5.0 PTPRG-AS1:17
5.1 PTPRG-AS1:17
5.2 PTPRG-AS1:17