Transcript: PTPRG-AS1:23

Basic information

LNCipedia transcript ID: PTPRG-AS1:23 
LNCipedia gene ID: PTPRG-AS1
Location (hg38): chr3:62315829-62318892
Strand: -
Class: bidirectional
Sequence Ontology term:
Transcript size: 266 bp
Exons: 4
Sources: FANTOM CAT (stringent)
Alternative transcript names: ENSG00000241472.2|FTMT20900046375.1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -195.653 non-coding 
CPAT coding probability 0.02% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
PTPRG-AS1:23 no no no no

Available literature

  1. Iranpour (2016), Expression analysis of four long noncoding RNAs in breast cancer., Tumour Biol.
  2. Zhao (2014), Comprehensive characterization of cancer subtype associated long non-coding RNAs and their clinical implications., Sci Rep


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 PTPRG-AS1:23
5.0 PTPRG-AS1:23
5.1 PTPRG-AS1:23
5.2 PTPRG-AS1:23