Transcript: PURPL:31

Basic information

LNCipedia transcript ID: PURPL:31 
LNCipedia gene ID: PURPL
Location (hg38): chr5:27472284-27485828
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1300 bp
Exons: 3
Sources: Broad Institute
Alternative transcript names: TCONS_00009241
Alternative gene names: XLOC_004323; linc-CDH6-5;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 1 non-coding 
PhyloCSF score -6.0548 non-coding 
CPAT coding probability 0.27% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
PURPL:31 no no no no

Available literature

  1. Li (2017), Long Noncoding RNA PURPL Suppresses Basal p53 Levels and Promotes Tumorigenicity in Colorectal Cancer., Cell Rep
  2. Hünten (2015), p53-Regulated Networks of Protein, mRNA, miRNA, and lncRNA Expression Revealed by Integrated Pulsed Stable Isotope Labeling With Amino Acids in Cell Culture (pSILAC) and Next Generation Sequencing (NGS) Analyses., Mol. Cell Proteomics


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-C5orf17-6:3
3.1 lnc-C5orf17-8:3
4.0 LINC01021:4
4.1 LINC01021:4
5.0 LINC01021:4
5.1 PURPL:5
5.2 PURPL:31