Transcript: PURPL:35

Basic information

LNCipedia transcript ID: PURPL:35 
HGNC Gene Symbol: PURPL    
HGNC Full Gene Name: p53 upregulated regulator of p53 levels
Ensembl Gene ID: ENSG00000250337
Ensembl Transcript ID: ENST00000512067
Location (hg38): chr5:27472292-27486146
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1610 bp
Exons: 3
Sources: Biogazelle lncRNA chip; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000512067; ENST00000512067.1; RP11-46C20.1-004; OTTHUMT00000366537.1; NONHSAT100804; ENST00000512067.5
Alternative gene names: ENSG00000250337; RP11-46C20.1; ENSG00000250337.1; OTTHUMG00000161968.1; LINC01021; ENSG00000250337.5; ; PURPL


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 1 non-coding 
PhyloCSF score -6.0548 non-coding 
CPAT coding probability 0.26% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
PURPL:35 no no no no

Available literature

  1. Li (2017), Long Noncoding RNA PURPL Suppresses Basal p53 Levels and Promotes Tumorigenicity in Colorectal Cancer., Cell Rep
  2. Hünten (2015), p53-Regulated Networks of Protein, mRNA, miRNA, and lncRNA Expression Revealed by Integrated Pulsed Stable Isotope Labeling With Amino Acids in Cell Culture (pSILAC) and Next Generation Sequencing (NGS) Analyses., Mol. Cell Proteomics


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-C5orf17-6:5
3.1 lnc-C5orf17-8:6
4.0 LINC01021:8
4.1 LINC01021:8
5.0 LINC01021:8
5.1 PURPL:9
5.2 PURPL:35