Transcript: PURPL:38

Basic information

LNCipedia transcript ID: PURPL:38 
LNCipedia gene ID: PURPL
Location (hg38): chr5:27472301-27491560
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 8730 bp
Exons: 4
Sources: FANTOM CAT (stringent)
Alternative transcript names: ENSG00000250337.1|HBMT00001135412.1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score 32.5771 non-coding 
CPAT coding probability 0.95% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
PURPL:38 no no no no

Available literature

  1. Li (2017), Long Noncoding RNA PURPL Suppresses Basal p53 Levels and Promotes Tumorigenicity in Colorectal Cancer., Cell Rep
  2. Hünten (2015), p53-Regulated Networks of Protein, mRNA, miRNA, and lncRNA Expression Revealed by Integrated Pulsed Stable Isotope Labeling With Amino Acids in Cell Culture (pSILAC) and Next Generation Sequencing (NGS) Analyses., Mol. Cell Proteomics


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 LINC01021:20
5.0 LINC01021:20
5.1 PURPL:12
5.2 PURPL:38