Transcript: PWRN1:27

Basic information

LNCipedia transcript ID: PWRN1:27 
HGNC Gene Symbol: PWRN1    
HGNC Full Gene Name: Prader-Willi region non-protein coding RNA 1
Ensembl Gene ID: ENSG00000259905
Ensembl Transcript ID: ENST00000562501
Location (hg38): chr15:24570026-24587773
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 642 bp
Exons: 4
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000562501.1; PWRN1-006; OTTHUMT00000422097.1; NONHSAT040926
Alternative gene names: ENSG00000259905.1; PWRN1; OTTHUMG00000173077.4; ENSG00000259905.5; NCRNA00198


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -14.711 non-coding 
CPAT coding probability 2.97% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
PWRN1:27 no no no no

Available literature

  1. Zhang (2015), Cancer Specific Long Noncoding RNAs Show Differential Expression Patterns and Competing Endogenous RNA Potential in Hepatocellular Carcinoma., PLoS ONE
  2. Buiting (2007), C15orf2 and a novel noncoding transcript from the Prader-Willi/Angelman syndrome region show monoallelic expression in fetal brain., Genomics


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-C15orf2-2:25
4.0 PWRN1:27
4.1 PWRN1:27
5.0 PWRN1:27
5.1 PWRN1:27
5.2 PWRN1:27