Transcript: PWRN1:6

Basic information

LNCipedia transcript ID: PWRN1:6 
LNCipedia gene ID: PWRN1
Location (hg38): chr15:24493137-24513176
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 902 bp
Exons: 5
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00023874; NONHSAT040907
Alternative gene names: XLOC_011181; linc-C15orf2-1; NCRNA00198


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 19.7036 non-coding 
CPAT coding probability 15.84% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
PWRN1:6 no no no no

Available literature

  1. Zhang (2015), Cancer Specific Long Noncoding RNAs Show Differential Expression Patterns and Competing Endogenous RNA Potential in Hepatocellular Carcinoma., PLoS ONE
  2. Buiting (2007), C15orf2 and a novel noncoding transcript from the Prader-Willi/Angelman syndrome region show monoallelic expression in fetal brain., Genomics


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-C15orf2-2:6
3.1 lnc-C15orf2-2:7
4.0 PWRN1:6
4.1 PWRN1:6
5.0 PWRN1:6
5.1 PWRN1:6
5.2 PWRN1:6