Transcript: PWRN2:2

Basic information

LNCipedia transcript ID: PWRN2:2 
LNCipedia gene ID: PWRN2
Ensembl Gene ID: ENSG00000260551
Ensembl Transcript ID: ENST00000567246
Location (hg38): chr15:24164777-24169948
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 4295 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000567246.1; PWRN2-001; OTTHUMT00000422053.1; NONHSAT040874
Alternative gene names: ENSG00000260551.1; PWRN2; OTTHUMG00000173073.1; NCRNA00199


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 36.9257 non-coding 
CPAT coding probability 2.36% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
PWRN2:2 no no no no

Available literature

  1. Huang (2016), Aberrant expression of long noncoding RNAs in cumulus cells isolated from PCOS patients., J. Assist. Reprod. Genet.
  2. Buiting (2007), C15orf2 and a novel noncoding transcript from the Prader-Willi/Angelman syndrome region show monoallelic expression in fetal brain., Genomics


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-NDN-1:1
4.0 PWRN2:2
4.1 PWRN2:2
5.0 PWRN2:2
5.1 PWRN2:2
5.2 PWRN2:2