Transcript: PWRN2:5

Basic information

LNCipedia transcript ID: PWRN2:5 
LNCipedia gene ID: PWRN2
Location (hg38): chr15:24162759-24169874
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 626 bp
Exons: 2
Sources: Broad Institute
Alternative transcript names: TCONS_00023588
Alternative gene names: XLOC_011402; linc-NDN-3; NCRNA00199


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -19.9156 non-coding 
CPAT coding probability 0.52% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
PWRN2:5 no no no no

Available literature

  1. Huang (2016), Aberrant expression of long noncoding RNAs in cumulus cells isolated from PCOS patients., J. Assist. Reprod. Genet.
  2. Buiting (2007), C15orf2 and a novel noncoding transcript from the Prader-Willi/Angelman syndrome region show monoallelic expression in fetal brain., Genomics


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-NDN-1:2
3.1 lnc-NDN-1:4
4.0 PWRN2:5
4.1 PWRN2:5
5.0 PWRN2:5
5.1 PWRN2:5
5.2 PWRN2:5