Transcript: PXN-AS1:12

Basic information

LNCipedia transcript ID: PXN-AS1:12 
LNCipedia gene ID: PXN-AS1
Location (hg38): chr12:120201308-120210519
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 726 bp
Exons: 4
Sources: FANTOM CAT (stringent)
Alternative transcript names: ENSG00000255857.1|ENST00000542314.1
Alternative gene names: EyeLinc4


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -236.3985 non-coding 
CPAT coding probability 2.02% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
PXN-AS1:12 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 PXN-AS1:12
5.0 PXN-AS1:12
5.1 PXN-AS1:12
5.2 PXN-AS1:12