Transcript: PXN-AS1:4

Basic information

LNCipedia transcript ID: PXN-AS1:4 
HGNC Gene Symbol: PXN-AS1    
HGNC Full Gene Name: PXN antisense RNA 1
Ensembl Gene ID: ENSG00000255857
Ensembl Transcript ID: ENST00000542314
Location (hg38): chr12:120201327-120210519
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 707 bp
Exons: 4
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000542314.1; RP1-278C19.3-003; OTTHUMT00000402648.1; NONHSAT031116; ENST00000542314.5
Alternative gene names: ENSG00000255857.1; RP1-278C19.3; OTTHUMG00000169166.1; PXN-AS1; ENSG00000255857.5; EyeLinc4


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 1 non-coding 
PhyloCSF score -236.3985 non-coding 
CPAT coding probability 3.37% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
PXN-AS1:4 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-SIRT4-1:2
4.0 PXN-AS1:4
4.1 PXN-AS1:4
5.0 PXN-AS1:4
5.1 PXN-AS1:4
5.2 PXN-AS1:4