Transcript: PXN-AS1:5

Basic information

LNCipedia transcript ID: PXN-AS1:5 
HGNC Gene Symbol: PXN-AS1    
HGNC Full Gene Name: PXN antisense RNA 1
Ensembl Gene ID: ENSG00000255857
Ensembl Transcript ID: ENST00000539446
Location (hg38): chr12:120201356-120211512
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 827 bp
Exons: 4
Sources: Gencode v13; Ensembl release 68 - Jul 2012; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000539446.1; RP1-278C19.3-005; OTTHUMT00000402650.1; ENST00000539446.5
Alternative gene names: ENSG00000255857.1; RP1-278C19.3; OTTHUMG00000169166.1; PXN-AS1; ENSG00000255857.5; EyeLinc4


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 1 non-coding 
PhyloCSF score -282.9297 non-coding 
CPAT coding probability 1.30% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
PXN-AS1:5 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-SIRT4-1:4
4.0 PXN-AS1:5
4.1 PXN-AS1:5
5.0 PXN-AS1:5
5.1 PXN-AS1:5
5.2 PXN-AS1:5