Transcript: RAB11B-AS1:1

Basic information

LNCipedia transcript ID: RAB11B-AS1:1 
HGNC Gene Symbol: RAB11B-AS1    
HGNC Full Gene Name: RAB11B antisense RNA 1
RefSeq ID: NR_038237
Location (hg38): chr19:8374376-8390691
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 1022 bp
Exons: 3
Sources: NONCODE v4; Refseq - Dec 2014; Refseq - NCBI Annotation Release 106
Alternative transcript names: NONHSAT060897; NR_038237; NR_038237.1
Alternative gene names: ; RAB11B-AS1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -12.1808 non-coding 
CPAT coding probability 1.64% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
RAB11B-AS1:1 yes no no no

Available literature

  1. Chen (2018), Long non-coding RNA <i>RAB11B-AS1</i> prevents osteosarcoma development and progression via its natural antisense transcript <i>RAB11B</i>., Oncotarget


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-KANK3-2:1
4.0 RAB11B-AS1:1
4.1 RAB11B-AS1:1
5.0 RAB11B-AS1:1
5.1 RAB11B-AS1:1
5.2 RAB11B-AS1:1