Transcript: RAB11B-AS1:5

Basic information

LNCipedia transcript ID: RAB11B-AS1:5 
LNCipedia gene ID: RAB11B-AS1
Ensembl Gene ID: ENSG00000269386
Ensembl Transcript ID: ENST00000597407
Location (hg38): chr19:8374421-8377827
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 374 bp
Exons: 3
Sources: NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: NONHSAT060898; ENST00000597407.1
Alternative gene names: ENSG00000269386.1; RAB11B-AS1; ENSG00000269386.5;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -12.1808 non-coding 
CPAT coding probability 1.70% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
RAB11B-AS1:5 no no no no

Available literature

  1. Chen (2018), Long non-coding RNA <i>RAB11B-AS1</i> prevents osteosarcoma development and progression via its natural antisense transcript <i>RAB11B</i>., Oncotarget


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-KANK3-2:5
4.0 RAB11B-AS1:5
4.1 RAB11B-AS1:5
5.0 RAB11B-AS1:5
5.1 RAB11B-AS1:5
5.2 RAB11B-AS1:5