Transcript: RAB30-AS1:15

Basic information

LNCipedia transcript ID: RAB30-AS1:15 
HGNC Gene Symbol: RAB30-AS1    
HGNC Full Gene Name: RAB30 antisense RNA 1 (head to head)
Ensembl Gene ID: ENSG00000246067
Ensembl Transcript ID: ENST00000533708
Location (hg38): chr11:83072118-83073383
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 825 bp
Exons: 2
Sources: Biogazelle lncRNA chip; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000533708; ENST00000533708.1; RP11-113K21.5-005; OTTHUMT00000392430.1; NONHSAT023373
Alternative gene names: ENSG00000246067; RP11-113K21.5; ENSG00000246067.2; OTTHUMG00000167010.1; ENSG00000246067.3; RAB30-AS1; ENSG00000246067.7;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 1 non-coding 
PhyloCSF score -21.634 non-coding 
CPAT coding probability 7.72% non-coding 
Bazzini small ORFs 1 coding 
orfFrame6.657863048
seqAAMINKGVRRNRCWKVTKVERDVALALQVRRERE
covF1Prop0.2

In stringent set: no

Locus conservation

Locus conservation?
RAB30-AS1:15 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-PCF11-1:10
3.1 lnc-PCF11-1:10
4.0 RAB30-AS1:15
4.1 RAB30-AS1:15
5.0 RAB30-AS1:15
5.1 RAB30-AS1:15
5.2 RAB30-AS1:15