Transcript: RAD51-AS1:1

Basic information

LNCipedia transcript ID: RAD51-AS1:1 
LNCipedia gene ID: RAD51-AS1
Location (hg38): chr15:40686208-40695109
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 8686 bp
Exons: 2
Sources: NONCODE v4
Alternative transcript names: NONHSAT041865
Alternative gene names: TODRA


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 23.6133 non-coding 
CPAT coding probability 4.95% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
RAD51-AS1:1 yes no no no

Available literature

  1. Gazy (2015), TODRA, a lncRNA at the RAD51 Locus, Is Oppositely Regulated to RAD51, and Enhances RAD51-Dependent DSB (Double Strand Break) Repair., PLoS ONE


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-FAM82A2-2:4
4.0 RAD51-AS1:1
4.1 RAD51-AS1:1
5.0 RAD51-AS1:1
5.1 RAD51-AS1:1
5.2 RAD51-AS1:1